Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVIQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNP--MIDEVI--NQKPRVVILNKKDMSNLNE---MSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKRSIA----QTGNKPGVTKQQQWIKVSNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKSHYNIEVPEDAEIIAWFDAIGKKRGLIRRGNEIDYEAVIELIIYDIRNAKIGNYCFDIFKDMTEELANDANN |
| 2YV5 Chain:A ((74-295)) | -----------------RPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEGF------------------ICILAGPSGVGKSSILSRLTGEELRTQEV-------TTTGVRLIPFGKGSFVGDTPGFSKVEATMF----------------VKPREVRN--------------------------YFREFLRYQCKYPDCTHTN----EPGCA--VKEAVKNGEISCERYKSYLKIIKVYLEEI-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YV5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -98678 for 1552 contacts (-63.6/contact) +
2D Compatibility (PS) -20917 + (NN) -1038 + (LL) 5800
1D Compatibility (HY) -8400 + (ID) 1850
Total energy: -125083.0 ( -80.59 by residue)
QMean score : 0.424
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