Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKPIFAVGDVHGEITLLDELLENWD--KERERLLFVGDLIDRGENPAAVLRRVKALADQTGAIVLKGNHEQMLLDFLENPSGKMHYYLSQGGMETIQSLIADSLDKKMTPEGLAKRVKEEASELIDFIRKLPLYYEEG--KYVFVHAGVDLTKKDWHDTEERDFFWIREPFLF-----------------GQNKTGKVFIFGHTPVQNLHIDESSGIWVSEDKTRLDIDGGAVFGGELHGVVVEEKVITKSFSVKK
2QJC Chain:A ((18-242))
TGRVIIVGDIHGCRAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPDSFGVVRLLKRL----GAYSVLGNHDAKLLKLVKKL-----------------SLA--------------PLAQSIPTDVETYLSQLPHIIRIPAHNVMVAHAGLHPQR-PVDRQYEDEVTTMRNLIEKVTLTATEETNDGGKPWASMWRGPETVVFGHDARRGLQ------E-Q-YKPLAIGLDSRCVYGGRLSAAVFPGGCII-------
General information:
TITO was launched using:
RESULT:
Template:
2QJC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112942 for 1473 contacts (-76.7/contact) +
2D Compatibility (PS) -20055 + (NN) -10585 + (LL) 2448
1D Compatibility (HY) -12000 + (ID) 2250
Total energy: -155384.0 ( -105.49 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_2QJC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QJC-query.scw
PDB file :
Tito_Scwrl_2QJC.pdb
: