Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSASILNAQNLSKVVGSAEGKLTILHDLSLDLARGDSLAIVGSSGSGKSTLLGLLAGLDQPSGGEVRLAGHALGDLDEDQRARVRAAHVGFVFQSFQLLDSLDALENVML-----PLELEGRADARQR-ARELLERV--GLGQRLGHYPRQLSGGEQQRVAIARAFAAEPDVLFADEPTGNLDSATGERISDLLFELNRERGTTLVLVTHDERLAHRCRRLIRLESGRLIDRVEP
2IXF Chain:C ((31-237))
--------------------NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDH-HYLHTQVAAVG----QEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQ---
General information:
TITO was launched using:
RESULT:
Template:
2IXF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63915 for 1484 contacts (-43.1/contact) +
2D Compatibility (PS) -21818 + (NN) -10682 + (LL) 1908
1D Compatibility (HY) -14400 + (ID) 3450
Total energy: -112357.0 ( -75.71 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_2IXF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IXF-query.scw
PDB file :
Tito_Scwrl_2IXF.pdb
: