Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLVLAVLLTVAAADSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYCGLGGSGTPVDELDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTYSYSCSGSAITCSSKNKECEAFICNCDRNAAICFSK--APYNKAHKNLDTKKYCQS
4HG9 Chain:A ((1-117))
----------------------HLLQFRKMIKKM-TGKEPVVSYAFYGCYCGSGGRGKPKDATDRCCFVHDCCYEKV---TGC-----DPKWDDYTYSWKDGDIVCG-GDDPCKKEVCECDKAAAICFRDNLKTYKKRYMAYPDI-LCSS
General information:
TITO was launched using:
RESULT:
Template:
4HG9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52860 for 850 contacts (-62.2/contact) +
2D Compatibility (PS) -12559 + (NN) -11058 + (LL) 3232
1D Compatibility (HY) -11200 + (ID) 2400
Total energy: -86845.0 ( -102.17 by residue)
QMean score : 0.364
(partial model without unconserved sides chains):
PDB file :
Tito_4HG9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HG9-query.scw
PDB file :
Tito_Scwrl_4HG9.pdb
: