Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSYDVIISGGGLLGLITAVGLSNNSVSVAVIEKNNLPRIIDDNRAFAISQGSRKILEKLGIWQFIESEAEPILDICILD-ENSPITVHYNHKMVSEEPMGYVINSTVIWNAINNNFLNKLNIYSL---HSYRTITCDAGYVEVTLG-NN--QKLISSLLICAEGKNSKLPGLFSMSIIK---FDYKQSSIVFNVKHELHHQNLAVEQFFPGGPFAILPMKSGYTSSIVWTEKSEISKMLMNLSEEEFIIELKKRFGSYLGEVKLDG----ERKSYPLSFASAKKLYKSRVLLIGDAAHSIHPVAGQGLNLGIRDAESVVRQITAAKAFGIDVGSSYLLKKISRDRCLDNFTMALATDGLNRIFSN---RIFCAKTLRNFGLMAVENSKFLKKRFIRHAMGFV |
| 1K0I Chain:A ((1-388)) | MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQRRR-IDLKR--LSGGKTVTVYGQTEVTRDLMEAREAC-GATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADT-PPVSHELIYANHPRGFALCSQRSA-TRSQYYVQVPLSEKV--EDWSDERFWTELKARLPSEVAE-KLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYR--EGR--GELLERYSAICLRRIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGSEAGLATIAENYVGLP |
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General information:
TITO was launched using:
| RESULT:
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Template: 1K0I.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -230428 for 3195 contacts (-72.1/contact) +
2D Compatibility (PS) -39239 + (NN) -1104 + (LL) 768
1D Compatibility (HY) -3200 + (ID) 3200
Total energy: -276403.0 ( -86.51 by residue)
QMean score : 0.427
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