Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDG-PILTTKIEEE
4IU6 Chain:A ((132-376))
----SSEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGAR-KLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAP-NVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTRRLD--
General information:
TITO was launched using:
RESULT:
Template:
4IU6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96678 for 2126 contacts (-45.5/contact) +
2D Compatibility (PS) -27116 + (NN) -13762 + (LL) 1140
1D Compatibility (HY) -13600 + (ID) 3950
Total energy: -153966.0 ( -72.42 by residue)
QMean score : 0.569
(partial model without unconserved sides chains):
PDB file :
Tito_4IU6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IU6-query.scw
PDB file :
Tito_Scwrl_4IU6.pdb
: