Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIILMGLPGAGKGTQASEIVKKFPIPHISTGDMFRKAIKEETELGKEAKSYMDRGELVPDEVTVGIVKERISEDDAKK-GFLLDGFPRTIEQAEALNNIMSELDRNIDAVINIEVPEEELMNRLTGRRICESCGTTYHLVFNPPKVEGICDIDGGKLYQREDDNPETVANRLSVNIKQSKPILDFYDQKGVLKNIDGSKDISDVTKDVIDILDHL
1ZAK Chain:A ((6-208))
LKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALET----LEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIA----SRLTQRFDDTEEKVKLRLETYYQNIESLLSTYE--NIIVKVQGDATVDAVFAKIDELL---
General information:
TITO was launched using:
RESULT:
Template:
1ZAK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57206 for 1492 contacts (-38.3/contact) +
2D Compatibility (PS) -21725 + (NN) -12801 + (LL) 696
1D Compatibility (HY) -16000 + (ID) 3950
Total energy: -110986.0 ( -74.39 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_1ZAK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZAK-query.scw
PDB file :
Tito_Scwrl_1ZAK.pdb
: