Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNGLEEKGYKAAVIKFDAASESDFVEAIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIENNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERGNMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNANLKDELKADYVKNIPLNRLGSAKEVAEAVAFLLSDHSSYITGETLKVNGGLYM
4BNV Chain:B ((23-268))
MSLQGKVALVTGASRGIGQAIALELGRLG-AVVIGTATSASGAEKIAETLKANGVEGAGLVLDVSSDESVAATLEHIQQHLGQPLIVVNNAGI------------EWFDVVNTNLNSLYRLSKAVLRGMTKARWGRIINIGSVVG-----GQTNYAAAKAGLEGFTRALAREVGSRAITVNAVAPGFIDTDMTRELPEAQREALLGQIPLGRLGQAEEIAKVVGFLASDGAAYVTGATVPVNGGMYM
General information:
TITO was launched using:
RESULT:
Template:
4BNV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114404 for 1964 contacts (-58.3/contact) +
2D Compatibility (PS) -24929 + (NN) -8155 + (LL) 1632
1D Compatibility (HY) -19200 + (ID) 4500
Total energy: -169556.0 ( -86.33 by residue)
QMean score : 0.619
(partial model without unconserved sides chains):
PDB file :
Tito_4BNV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BNV-query.scw
PDB file :
Tito_Scwrl_4BNV.pdb
: