Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIKIQKIHPNALIPKYQTEGSSGFDLHAVEEVVIKPHSVGLVRIGICLSLEVGYELQVRTRSGLALNHQVMVLNSPGTVDNDYRGEIKVILANLSDKDFKVQVGDRIAQGVVQKTYKAEFIECEQLDETSRGSGGFGSTGVSKA
2OKE Chain:C ((22-131))
--------------PTRQSPGAAGYDLYSAYDYTIPPGERQLIKTDISMSMPKFCYGRIAPRSGLSLKG---IDIGGGVIDEDYRGNIGVILINNGKCTFNVNTGDRIAQLIYQRIYYPELEEVQSL------------------
General information:
TITO was launched using:
RESULT:
Template:
2OKE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49760 for 701 contacts (-71.0/contact) +
2D Compatibility (PS) -11873 + (NN) -3223 + (LL) 1792
1D Compatibility (HY) -6800 + (ID) 2000
Total energy: -71864.0 ( -102.52 by residue)
QMean score : 0.393
(partial model without unconserved sides chains):
PDB file :
Tito_2OKE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OKE-query.scw
PDB file :
Tito_Scwrl_2OKE.pdb
: