Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKPLIDMKNLTKTYTLGGETFKALDDVTFTVEQGEFLSIVGPSGSGKSTLMNMIGCLDVPDEGSYHLDDVDVFKLSDNKLSEIRNKKIGFIFQQFNLLPKLSAFENVELPLIYAGLSVSAREKAAIECLEKVGLLEKRRNLPT-------QLSGGQQQRVAIARALAGKPQILLADEPTGALDSKTGKEVMGILQELNRAGNTIVMITHDPTIASYGTRSIRIQDGKLFHEEATQA
2FGJ Chain:C ((25-224))
------------------------LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWL----RRQVGVVLQD-NVLLNRSIIDNISLA--NPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAARLSTVKNADRIIVMEKGKIVEQ-----
General information:
TITO was launched using:
RESULT:
Template:
2FGJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81368 for 1473 contacts (-55.2/contact) +
2D Compatibility (PS) -21181 + (NN) -11037 + (LL) 2904
1D Compatibility (HY) -14000 + (ID) 3400
Total energy: -128082.0 ( -86.95 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_2FGJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FGJ-query.scw
PDB file :
Tito_Scwrl_2FGJ.pdb
: