Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKENKYDDKHFFEQYSQMPRSKEGLQAAGEWHEFKKLLPDFHQKVVLDLGCGFGWHCIYAAEQGAKKVVGVDLSARMLTEAKHKTTSPIVHYERRAMENIDIEPETYDIVLSSLALHYVASFNDICQKVNTNLITGGSFVFSVEHPIFTADGRQDWFTDEAGNKLHWPVDRYFNESIRTSHFLGEDVQKYHRTLTTYIQTLLKNGFQINSIIEPEPAPEL-KDLPEMQDEYRRPMMLIISATKN
3G5L Chain:A ((25-244))
----------------------EGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEPEPAPELKDLPEMQDE-YRRPMMLLISATK-
General information:
TITO was launched using:
RESULT:
Template:
3G5L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107888 for 1695 contacts (-63.7/contact) +
2D Compatibility (PS) -23401 + (NN) -12843 + (LL) 1308
1D Compatibility (HY) -28000 + (ID) 8700
Total energy: -179524.0 ( -105.91 by residue)
QMean score : 0.518
(partial model without unconserved sides chains):
PDB file :
Tito_3G5L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G5L-query.scw
PDB file :
Tito_Scwrl_3G5L.pdb
: