Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALFLQELVRLTEGTDLRVSAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFLALLEAVK
7TIM Chain:A ((2-237))
-RTFFVGGNFKLNGSKQSIKEIVERL-NTASIPENVEVVICPPATYLDYSVSLVKKPQVTVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRSYFHEDDKFIADKTKFALGQGVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDWTNV--VVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLKP-----------
General information:
TITO was launched using:
RESULT:
Template:
7TIM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90334 for 1999 contacts (-45.2/contact) +
2D Compatibility (PS) -25896 + (NN) -13064 + (LL) 1732
1D Compatibility (HY) -17200 + (ID) 4850
Total energy: -149612.0 ( -74.84 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_7TIM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-7TIM-query.scw
PDB file :
Tito_Scwrl_7TIM.pdb
: