Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKPIVR-DTFFLQQKSQMAS-R--ADVSLAKDLQDTLHANQNYCVGMAANMIGSLKRVIIINVG---------ITNLVMFNPVLVAKS-DPYETEESCLSLVG-CRSTQRYRHITISYRDINWKEQQIKLTDFPAQICQHELDHLEGILI
3U04 Chain:A ((4-165))
SVLSIVTVPDKRLSLCSEEVEKVDQSIRKLVDDMFETMHAN--QGLGLAAVQVGVHKRILVMNVPEEIEGYELYGGPYCIINPKIVDISQEKVKLKEGCLSVPGYFDYIVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVF
General information:
TITO was launched using:
RESULT:
Template:
3U04.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81055 for 1056 contacts (-76.8/contact) +
2D Compatibility (PS) -13982 + (NN) 3157 + (LL) 40
1D Compatibility (HY) -8800 + (ID) 2150
Total energy: -102790.0 ( -97.34 by residue)
QMean score : 0.329
(partial model without unconserved sides chains):
PDB file :
Tito_3U04.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U04-query.scw
PDB file :
Tito_Scwrl_3U04.pdb
: