Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKFQVI-SHPLIQHKLSILRRTTTSTKDFRELVDEIAMLMGYEVSRDLPLEDVEIQTPVA-TTVQKQLAGKKLAIVPILRAGIGMVDGFLSLVPAAKVGHIGMYRDEETFQPVEYLVKLPEDIDQRQIFVVDPMLATGGSAILAVDSLKKRGA--ASIKFVCLVAAPEGVAALQEAHPDVDIYTAALDEKLNEHGYIVPGLGDAGDRLFGTK
1BD3 Chain:D ((33-243))
-PNVVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKKEVTTPLDVSYHGVSFY-SKICGVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTAEPKLIYEKLPADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILAAPQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGTM
General information:
TITO was launched using:
RESULT:
Template:
1BD3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158485 for 1601 contacts (-99.0/contact) +
2D Compatibility (PS) -21890 + (NN) -2606 + (LL) 36
1D Compatibility (HY) -16800 + (ID) 3550
Total energy: -203295.0 ( -126.98 by residue)
QMean score : 0.590
(partial model without unconserved sides chains):
PDB file :
Tito_1BD3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BD3-query.scw
PDB file :
Tito_Scwrl_1BD3.pdb
: