Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAA-NGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR--------------------------GRADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVDAVGTMD--EVFARALRALGK
4NU0 Chain:A ((6-213))
MNLLIMGLPGAGKGTQAAKIVEQFHVAHISTGDMFRAAMANQTEMGVLAKSYIDKGELVPDEVTNGIVKERLSQDDIKETGFLLDGYPRTIEQAHALDKTLAELGIELEGIINIEVNPDSLLERLSGRIIHRVTGETFHKVFNPPVDYKEEDYYQREDDKPETVKRRLDVNIAQGEPIIAHYRAKGLVHDIEGNQDINDVFSDIEKVL--
General information:
TITO was launched using:
RESULT:
Template:
4NU0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55191 for 1379 contacts (-40.0/contact) +
2D Compatibility (PS) -19927 + (NN) -14461 + (LL) -108
1D Compatibility (HY) -13600 + (ID) 3700
Total energy: -106987.0 ( -77.58 by residue)
QMean score : 0.583
(partial model without unconserved sides chains):
PDB file :
Tito_4NU0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NU0-query.scw
PDB file :
Tito_Scwrl_4NU0.pdb
: