Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTPSATVAPVKRIPYAEASRALLRDSVLDAMRDLLLT-RDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSM----PPEADHDVAADLARLITPFAERHGVIN----VP
3LSJ Chain:A ((2-208))
-------------ASPRAEQKQQTRHALMSAARHLMESGRGFGSLSLREVTRAAGIVPAGFYRHFSDMDQLGLALVAEVDETFRATLRAVRRNELGGLIDASVRIFLDAVGANRSQFLFLAREQYGGSLPIRQAIASLRQRITDDLAADLALL--NKMPHLDGAALDVFADLVVKTVFATLPELIDPPAADLPPHLMPAAKITHQLRFIMIGGKHWHGLP
General information:
TITO was launched using:
RESULT:
Template:
3LSJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107065 for 1321 contacts (-81.0/contact) +
2D Compatibility (PS) -20737 + (NN) -6008 + (LL) 996
1D Compatibility (HY) -6000 + (ID) 1550
Total energy: -140364.0 ( -106.26 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_3LSJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LSJ-query.scw
PDB file :
Tito_Scwrl_3LSJ.pdb
: