Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQYLDLMRHVREHGTFKSDRTGTGTYSVFGHQMRFDLAAGFPLVTTKKCHLKSIVHELLWFLKGSTNIAYLKEHGVSIWDEWADENGDLGPVYGYQWRSWPAPDGRHIDQIANLMAMLKKNPDSRRLIVSAWNPALIDEMALPPCHALFQFYVADGKLSCQLYQRSADIFLGVPFNIASYALLTLMVAQVAGLQPGEFIWTGGDCHLYANHLEQADLQLTREPLPLPSMKLNPEVKDLFDFRFEDFELVGYEAHPHIKAPVAV
4FOA Chain:D ((2-262))
MTPYEDLLRFVLETGTPKSDRTGTGTRSLFGQQMRYDLSAGFPLLTTKKVHFKSVAYELLWFLRGDSNIGWLHEHGVTIWDEWASDTGELGPIYGVQWRSWPAPSGEHIDQISAALDLLRTDPDSRRIIVSAWNVGEIERMALPPCHAFFQFYVADGRLSCQLYQRSADLFLGVPFNIASYALLTHMMAAQAGLSVGEFIWTGGDCHIYDNHVEQVRLQLSREPRPYPKLLL-ADRDSIFEYTYEDIVVKNYDPHPAIKAPV--
General information:
TITO was launched using:
RESULT:
Template:
4FOA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -204644 for 2049 contacts (-99.9/contact) +
2D Compatibility (PS) -28286 + (NN) -14604 + (LL) 256
1D Compatibility (HY) -31200 + (ID) 8700
Total energy: -287178.0 ( -140.16 by residue)
QMean score : 0.607
(partial model without unconserved sides chains):
PDB file :
Tito_4FOA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FOA-query.scw
PDB file :
Tito_Scwrl_4FOA.pdb
: