Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGF-LTGKRALIVGVASKLSIASGIAAAMHREGAELAFTYQNDKLRGRVEEFASGWGSRPELCFPCDVADDSQIEAVFAALGKHWDGLDIIVHSVGFAPGDQLDGDFTAVTTREGFRIAHDISAYSFIALAKAGREMMKGRNGSLLTLSYLGAERTMPNYNVMGMAKASLEAGVRYLAGSLGAEGTRVNAVSAGPIRTLAASGIKSFRKMLAANERQTPLRRNVTIEEVGNAGAFLCSDLASGISGEILYVDGGFNTTAMGPLDDD
3OIF Chain:D ((1-257))
MNFSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLN-TNRDGFLLAHNISSYSLTAVVKAARPMMT-EGGSIVTLTYLGGELVMPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKG-SDFNSILKDIEERAPLRRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSGFHITAR------
General information:
TITO was launched using:
RESULT:
Template:
3OIF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -182389 for 2198 contacts (-83.0/contact) +
2D Compatibility (PS) -27788 + (NN) -10851 + (LL) 144
1D Compatibility (HY) -26000 + (ID) 6300
Total energy: -253184.0 ( -115.19 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_3OIF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OIF-query.scw
PDB file :
Tito_Scwrl_3OIF.pdb
: