Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKQRILIVGAGFAGMWSALSAVRQLDRQGRDDVEVAVLAPQPELRIRP-RFYEPDVQR-------MAAPLGELFAAVGVRF-VQGSAQRIDVAGKRVEYRDA-EGTLAQLDYDRLVLAAGSGVWRPASVAGID--AAFDVDQLEDALRLEAHLHALRDLPDSPARNTVVVAGGGFTGIETATEMPARLRAILGEKAALRVIVVDRGAAIGASMGADLSGLIAEASAELGVEWCLGRSVAAVDAE-----------------------GVTLDDGQRIEAKTVVWTVGVRAS-TLTGQIPGERDAQGRLHVDRNLKVLGLDDVYATGDVARAATDDLG-NHALMTCQHAIALGRSAGNNVAADLLGVEPIPYSQVKYVTCLDLGGWGAVFTEGWDRQVRFVREEGKKIKTEINGVWIYPPAADRAVALAAADPLIPVVA |
| 3NTD Chain:A ((1-338)) | -MKKILIIGGVAGGASAAARARRLSE-----TAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVP-PIPGVDNPLTHSLRNIPDMDRILQTIQM-------NNVEHATVVGGGFIGLEMMESLHHLG---------IKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQT-SDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGR---------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NTD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -203125 for 2489 contacts (-81.6/contact) +
2D Compatibility (PS) -32373 + (NN) -6729 + (LL) 7112
1D Compatibility (HY) -11200 + (ID) 3200
Total energy: -249515.0 ( -100.25 by residue)
QMean score : 0.414
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