Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTPVVLITGAAGGLGRAIAKRFAQSHWRIAATDVDKEGLHALNAQVP----LDASGV-ADLRSADNCHTLMSKILARTGRLDALVNAAGVWREGPVENFTEEDFDLVLGVNLKASFYMCQAAI-PYLKENQGSIVNISSDSGRQAYRGSAAYCASKAALTMLSKTLALELAEQGVRVNAVSPADIATPMLDYQAERYGMGNPDGYKRALLKDYPQGKAARFIRPEEVAELVWYLCGPQAEAITGADLAVDFGLSAGR
2PNF Chain:A ((8-247))
---KVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVLSEE--------IKQKYKEQIPLG---RFGSPEEVANVVLFLCSELASYITGEVIHVNGGM----
General information:
TITO was launched using:
RESULT:
Template:
2PNF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136155 for 2005 contacts (-67.9/contact) +
2D Compatibility (PS) -25527 + (NN) -14724 + (LL) 116
1D Compatibility (HY) -18400 + (ID) 4200
Total energy: -198890.0 ( -99.20 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_2PNF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PNF-query.scw
PDB file :
Tito_Scwrl_2PNF.pdb
: