Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKIKIVLVDDHEMVRLGLKSFLNLQADVEVIGEASNGLEGIKKALELRPDVVVMDLVMPEMDGVEATLALLKDWPEAAILVLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNAIRKVARGEQAIENEVDKKIKAH-DKCPALHEGLTARERDILNLLAKGYDNQRIADELFISLKTVKTHVSNILGKLNVADRTQAVVYAFQHHLVPQDDE
1A04 Chain:A ((6-215))
--PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASL---ERDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF-----
General information:
TITO was launched using:
RESULT:
Template:
1A04.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95645 for 1641 contacts (-58.3/contact) +
2D Compatibility (PS) -21849 + (NN) -10585 + (LL) 196
1D Compatibility (HY) -16400 + (ID) 3650
Total energy: -147933.0 ( -90.15 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_1A04.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1A04-query.scw
PDB file :
Tito_Scwrl_1A04.pdb
: