Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------MNSIIELTDYYSSNNYAPLKLVISKGKGVKVWDTDGKQYIDCISGFSVANQGHCHPTIVKAMTEQASKLSIISRVLYSDNLGKWEEKIC-HLAKK---DKVLSLNSGTEAVEAAIKIARKWGSEVKGITDGQVEIIAMNNNFHGRTLGSLSLSNHDA-YKAGFHPLLQGTTTVDF-------GDIEQLTQAISPNTAAIILEPIQGEGGVNIPPKGYIQAVRQLCDKHQILMIADEIQVGLGRTGKWFAMEW--EQVVPDIYILGKALGGGLYPVSAVLANNDVMRVLTPGT--HGSTFGGNPLAIAISTAALDVLKDEQLVERSERLGSFLLKALLQLKHPSIKEIRGRGLFIGIELNTD----AAPFVDQLIQRGILCKDT-HRTIIRLSPPLVIDKEEIHQIVAAFQDVFKN- |
| 2OAT Chain:A ((36-439)) | GPPTSDDIFEREYKYGAHNY-----HPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALK-SQVDKL--TLTSRA-FYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTS-YDGFGPFMPGFDIIPYNDLPALERALQDP------NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYEN--VRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKP--GEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTH-GDIIRFAPPLVIKEDELRESIEIINKTILSF |
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General information:
TITO was launched using:
| RESULT:
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Template: 2OAT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -217651 for 3187 contacts (-68.3/contact) +
2D Compatibility (PS) -40460 + (NN) -21202 + (LL) 904
1D Compatibility (HY) -33600 + (ID) 7700
Total energy: -319709.0 ( -100.32 by residue)
QMean score : 0.534
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