Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAVKVAINGFGRIGRLAFRRIQEVEG--LEVVAVND-LTDDDMLAHLLKYDTMQGRFTGEVEVVDGG---FRVNGKEVKSFSEP-DASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSE-TVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVS-SDVVGMTYGSLFDATQTRVMSVG-DRQLVKVAAWYDNEMSYTAQLVRTLAYLAELSK |
1HDG Chain:O ((1-332)) | --ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDL-TDTKTLAHLLKYDSVHKKFPGKVEYT---ENSLIVDGKEIKVFAE-PDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAKGEDITVVIGCNEDQLKPE-HTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVHSYTNDQRVLDLPHKD-LRRARAA-AVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPDGSITDLTVLVEK-ETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSS-DIIGTTFSGIFDATITNV----IGGKLVKVASWYDNEYGYSNRVVDTLELLLKM-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1HDG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -149688 for 2777 contacts (-53.9/contact) +
2D Compatibility (PS) -33812 + (NN) -6828 + (LL) 372
1D Compatibility (HY) -33600 + (ID) 8600
Total energy: -232156.0 ( -83.60 by residue)
QMean score : 0.487
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