Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRKFSRYAFTSMAAVTLLSTLSPAALAIDSKNKPANSDIKFEVTQKSDAVKALKELPKSENVKNIYQDYAVTDVKTDKKGFTHYTLQPSVDGVHAPDKEVKVHADKSGKVVLINGDTDAKKVKPTNKVTLSKDDAADKAFKAVKIDKHKAKNLKDKVIKENKVEIDGDSNKYVYNVELITVTPEISHWKVKIDAQTGEILEKMNLVKEAAETGKGKG----VLGDTKDININSIDGGFSLEDLTHQGKLSAFSFNDQTGQ-ATLITNEDENF--VKDEQRAGVDANYYAKQTYDYYKDTFGRESYDNQGSPIVSLTHVNNYGGQDNRNNAAWIGDKMIYGDGDGRTFTSLSGANDVVAHELTHGVTQETANLEYKDQSGALNESFSDVFGYFVDDE-DFLMGEDVYTPGKEGDALRSMSNPEQFGQ-PAHMKDYVFTEKDNGGVHTNSGIPNKAAYNVIQAIGKSKSEQIYYRALTEYLTSNSNFKDCKDALYQAAKDLYDEQTAEQVYEAWNEVGVE |
1BQB Chain:A ((1-301)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGTGKGVLGD----TKDININSIDGGFSLEDLTHQGKLSAYNFNDQTGQA-TLITNEDENFVK--DDQRAGVDANYYAKQTYDYYKNTFGRESYDNHGSPIVSLTHVNHYGGQDNRNNAAWIGDKMIYGDGDGRTFTNLSGANDVVAHEITHGVTQQTANLEYKDQSGALNESFSDVFGYFVDD-EDFLMGEDVYTPGKEGDALRSMSNPEQFG-QPSHMKDYVYTEKDNGGVHTNSGIPNKAAYNVIQAIGKSKSEQIYYRALTEYLTSNSNFKDLKDALYQAAKDLYEQQTAEQVYEAWNEVGVE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1BQB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -44808 for 2554 contacts (-17.5/contact) +
2D Compatibility (PS) -31179 + (NN) -8109 + (LL) 14604
1D Compatibility (HY) -32000 + (ID) 13800
Total energy: -115292.0 ( -45.14 by residue)
QMean score : 0.744
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