Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNTRRSTSSLIVHEQPKSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNN--EGLSSLLLNWSTYQDSIIS-TEIQDLDVLTSGPIPPNPSELITSRAFANLYDTLL-MNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATG--------AKLLGVVLNRMPKDKSASYYAYYGTDES
3Q9L Chain:A ((2-187))
----------------------------------------ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTENLYILPASQTRDK--DALTREGVAKVLDDLKAMDFEFIVCDSPAGIE-TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGR-------------
General information:
TITO was launched using:
RESULT:
Template:
3Q9L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81010 for 1431 contacts (-56.6/contact) +
2D Compatibility (PS) -18807 + (NN) -9361 + (LL) 2608
1D Compatibility (HY) -10000 + (ID) 1800
Total energy: -118370.0 ( -82.72 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_3Q9L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q9L-query.scw
PDB file :
Tito_Scwrl_3Q9L.pdb
: