Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MTKIAMANFKSAMPVFKSHAYLKELEKTLKPQHFDRVFVFPDFLGLLPNAFL----HFTLGAQNAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRVLLKESPSFLKEKFDFFKGKNFKIVYCIGEDLTTREKG--FRAVKEFLSEQLENI-DLNYSNLIVAYEPIWAIGTKKSASLEDIYLTHGFLKQILNQK--------TPLLYGGSVNAQNAKEILGIDSVDGLLIGSASLELENFKTIISFL-
1YPI Chain:A ((2-248))
ARTFFVGGNFKLNGSKQSIKEIVERLNTASIPE-NVEVVICPPATYLDYSVSLVKKPQVTVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRSYFHEDDKFIADKTKFALGQGVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVK--DWTNVVVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLK-PEFVDIINSRN
General information:
TITO was launched using:
RESULT:
Template:
1YPI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131338 for 1908 contacts (-68.8/contact) +
2D Compatibility (PS) -24183 + (NN) -7024 + (LL) 320
1D Compatibility (HY) -12800 + (ID) 4000
Total energy: -179025.0 ( -93.83 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_1YPI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YPI-query.scw
PDB file :
Tito_Scwrl_1YPI.pdb
: