Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MKKVLIINGAKAFGHSGGKLNETLTHHAKKILESLGLEVDTT------------------------------IVDKGYEK-------SQEVEKFFSADATIWQMPGWWMGEPWIVKKYIDEVFTSGHGKLYASDGRSSQNPTKNYGKGGLMQGKKYMLSLTWNAPIEAFNDPSEFFEGVGVDVVYLHLHKAFQFLGLSALPTFICNDVMK--NPQVEQYLNSLTVHLRQAFGK-------------------------------------------------------- |
| 1D4A Chain:A ((1-273)) | VGRRALIVLAHS----ERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFA-----------YTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQG--IHGDMNVILWPIQSGILHFCGFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMKKEVQDEEKNKKFGLSVGHHLGKSIPTDNQIKARK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1D4A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -65843 for 1311 contacts (-50.2/contact) +
2D Compatibility (PS) -18837 + (NN) -6551 + (LL) 748
1D Compatibility (HY) -8000 + (ID) 1800
Total energy: -100283.0 ( -76.49 by residue)
QMean score : 0.512
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