Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPLVGINMKNYINTRAQTSEWLEATIPLLGNFSDVDTFIFPSMGTLETTANLL-AGTSFGFGPQNMAPEKSGPLTGEFSVESIIDLSANYVEIGHAERKNLFHEKTSEIAKKIQLALDEKITPVVCVGEGIRANDTNELKNALKKQIEALFDTIQVTQFKNVVLAYEPEWAIGKANSADTDYIESAHQALREIIRELGGDETL--VRIIYGGSVSKENAAEIVRQKNVDGLFVGRFGHKPQNFADIVSIVSKTKG
1YDV Chain:A ((3-248))
-RKYFVAANWKCN-GTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQS--KFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLID--NFDNVILVYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLK-ESFVDIIKSAM----
General information:
TITO was launched using:
RESULT:
Template:
1YDV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136415 for 1980 contacts (-68.9/contact) +
2D Compatibility (PS) -26667 + (NN) -10091 + (LL) 404
1D Compatibility (HY) -16000 + (ID) 4200
Total energy: -192969.0 ( -97.46 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_1YDV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YDV-query.scw
PDB file :
Tito_Scwrl_1YDV.pdb
: