Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMRKPLVGINMKNYINTRAQTSEWLEATIPLLGNFSDVDTFIFPSMGTLETTANLL-AGTSFGFGPQNMAPEKSGPLTGEFSVESIIDLSANYVEIGHAERKNLFHEKTSEIAKKIQLALDEKITPVVCVGEGIRANDTNELKNALKKQIEALFDTIQVTQFKNVVLAYEPEWAIGKANSADTDYIESAHQALREIIRELGGDETL--VRIIYGGSVSKENAAEIVRQKNVDGLFVGRFGHKPQNFADIVSIVSKTKG
1YDV Chain:A ((3-248))-RKYFVAANWKCN-GTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQS--KFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLID--NFDNVILVYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLK-ESFVDIIKSAM----


General information:
TITO was launched using:
RESULT:

Template: 1YDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136415 for 1980 contacts (-68.9/contact) +
2D Compatibility (PS) -26667 + (NN) -10091 + (LL) 404
1D Compatibility (HY) -16000 + (ID) 4200
Total energy: -192969.0 ( -97.46 by residue)
QMean score : 0.561

(partial model without unconserved sides chains):
PDB file : Tito_1YDV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1YDV-query.scw
PDB file : Tito_Scwrl_1YDV.pdb: