Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | --------------------------MGEMTLAFIEEQYKELDNLNNKENPA-----VLTRNTSTGELFVRKIIPSSFAP------------VIEQLKNLSSKYLPKIEVMIPKGNQLIVYEEYINGKNLADLMKT-NAPFDTDEVTRLMLMLSDALTELHANA--IIHRDIKPSNIMI---SSDGVLKLIDFDASRMFEVGKNQDTVN---LGTIGYAAPEQY---GYSQTDARSDIYSIGVLMLELLLG-------KNTLPDKEHATSLEKIAMQAGAFDPEQRYQSIQDFRTAVKNDSLGPSYVSELSDFTELDDSPTESAWKTPADEYENDFIPWY-KHIPGFRTGTPWKMIVAVFGYMFLIFGLFSPPTEGVKMSHTVNFFSNFFLIVPAFVIFTNLCGIWSKLPLLKSPSPGTRKAGIVIYIIVCVSIYGIYNEIFS- |
1KOB Chain:A ((23-374)) | INDYDKFYEDIWKKYVPQPVEVKQGS------V--YDYYDILEELGSG---AFGVVHRCVEKATG-RVFVAKFINTPY--PLDKYTVKNEISIMNQL---HHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHE--HSIVHLDIKPENIMCETK-KASSVKIIDFGLATKL-NPDE--IV-KVTTATAEFAAPEIVDREPV---GFYTDMWAIGVLGYVLLSGLSPFAGE-------DDLETLQNVKRCDWEFDE----------------------------------------DAFSSVSPEAKDFIKNLLQKEPRKRL-----TVHDALEHPWLK-GDHSNLTSRIPSSRYNKIRQKIKEKYADWPAPQPAIGRIANFSSLRKHRPQEY------------QIYDSYFDRKEA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KOB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -143145 for 2198 contacts (-65.1/contact) +
2D Compatibility (PS) -30847 + (NN) -15287 + (LL) 4560
1D Compatibility (HY) -12400 + (ID) 3300
Total energy: -200419.0 ( -91.18 by residue)
QMean score : 0.302
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