Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LTKLKKVMISVIAATL--LLLAGCGSSAVIKTDAGSVTQDELYEAMKTTYGNEVVQQLTFKKILEDKYTVTEKEVNAEYKKYEEQYG---DSFESTLSSNNLTKTSFKENLEYNLLVQKATEANMD----VSESKLKAYYKTWEPDITVRHILV------------DDEATAKEIQTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYALENKDDVSGIVKSTYGYHLIQLVKKTEKG-TYAKEKANVKAAYIKSQLTSENMTAALKKELKAANIDIKDSDLKDAFADYTSTSSTSSTTTSN------------------------------------------------------------------------------ |
| 1M5Y Chain:A ((25-427)) | ---VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQ-VTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQ-QALNGGQMGWGRIQELPGIFAQALSTA-KKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDRAYRMLMNRKFSEEAASWMQEQRASAYVKILS |
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General information:
TITO was launched using:
| RESULT:
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Template: 1M5Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 186 for 1815 contacts (0.1/contact) +
2D Compatibility (PS) -31602 + (NN) -14100 + (LL) 696
1D Compatibility (HY) -10000 + (ID) 2200
Total energy: -57020.0 ( -31.42 by residue)
QMean score : 0.427
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