Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKVALVTGSSRGLGREIAIALAKEGYDIAVNFSRNRKKAEEVQQEIEQLGRKCVIFKANVGDVEKVRELFKAVDEEFGRLDIFINNAASGVLRP--LMELEESHWDWTMNINAKALLFAGQEAAKLMQRHQSGKIISLSSIGSIRYLENYTTVGVSKAAVESLTRYLAVELAPFGIAVNAVSGGLIETD-ALNHFPNREELLKDAVSKTPAGRMIEPNDLVNAVLFLASEKADMIRGQTILVDGGRTLLV
4I08 Chain:A ((13-251))
--KVALVTGASRGIGKAIAELLAERGAKV-IGTATSESGAQAISDYLGDNGKGMAL---NVTNPESIEAVLKAITDEFGGVDILVNNA--GITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDM--N-----DEQRTATLAQVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGGMYMI-
General information:
TITO was launched using:
RESULT:
Template:
4I08.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112511 for 1987 contacts (-56.6/contact) +
2D Compatibility (PS) -25480 + (NN) -11084 + (LL) 1296
1D Compatibility (HY) -12800 + (ID) 4000
Total energy: -164579.0 ( -82.83 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_4I08.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4I08-query.scw
PDB file :
Tito_Scwrl_4I08.pdb
: