Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDKTKRKMIYETFMLILILLSLALLPYR---------NNFTFILNWIIWVIFTLDYLVRLYRADNKWHYVKTHPFQLIAIIPFYGGF---------RAARIVSFVHLLSITAMGRRYIV---PIYSFFRSNGLNRFLMIFVLLVIIIPVPMVFIEPE-----INNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRAKKPTNSSTQRANKITQLISETPDLTKEEIAVVEQFLTLRKKELADENTKSDSE
1ORQ Chain:C ((7-222))
------HPLVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKKTLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQKIL---------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1ORQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148003 for 1132 contacts (-130.7/contact) +
2D Compatibility (PS) -19146 + (NN) -3122 + (LL) 3904
1D Compatibility (HY) -19200 + (ID) 2700
Total energy: -188267.0 ( -166.31 by residue)
QMean score : 0.013
(partial model without unconserved sides chains):
PDB file :
Tito_1ORQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ORQ-query.scw
PDB file :
Tito_Scwrl_1ORQ.pdb
: