Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRKPFIAGNWKMNKNPEEAKAFIEAVASKLPSSELVEAGIAAPALTLSTVLEAAKGSELKIAAQNSYFENSGAFTGENSPKVLAEMGTDYVVIGHSERRDYFHETDQDINKKAKAIFANGLTPIICCGESLETYEAGKAVEFVGAQVSAALAGLSEEQVSSLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFVK
2BTM Chain:A ((1-249))
--RKPIIAGNWKMNGTLAEAVQFVEDVKGHVPPADEVISVVCAPFLFLDRLVQAADGTDLKIGAQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLIPIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVKQAVIAYEPIWAIGTGKSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKPDNIRDFLAQQQIDGALVGGASLEPASFLQLVEAGR
General information:
TITO was launched using:
RESULT:
Template:
2BTM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121366 for 2215 contacts (-54.8/contact) +
2D Compatibility (PS) -27596 + (NN) -16137 + (LL) 180
1D Compatibility (HY) -23200 + (ID) 6700
Total energy: -194819.0 ( -87.95 by residue)
QMean score : 0.611
(partial model without unconserved sides chains):
PDB file :
Tito_2BTM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BTM-query.scw
PDB file :
Tito_Scwrl_2BTM.pdb
: