Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKGLMISFEGPDGAGKTTVLEAVLPLLREKLSQDILTTREPGGVTISEEIRHIILDVKHTQMDKKTELLLYMAARRQHLVEKVLPALEEGKIVLMDRFIDSSVAYQGSGRGLDKSHIKWLNDYATDSHKPDLTLYFDVPSEVGLERIQKSVQREVNRLDLEQLDMHQRVRQGYLELADSEPNRIVTIDASQQLDEVIAETFSIILDRINQ
3HJN Chain:A ((1-192))
----MFITFEGIDGSGKSTQIQLLAQYLEKRG-KKVILKREPGGTETGEKIRKILLEE---EVTPKAELFLFLASR-NLLVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRK---NRFE-------KREFLERVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVREVKRR---
General information:
TITO was launched using:
RESULT:
Template:
3HJN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64920 for 1543 contacts (-42.1/contact) +
2D Compatibility (PS) -21100 + (NN) -13628 + (LL) 1388
1D Compatibility (HY) -14000 + (ID) 3950
Total energy: -116210.0 ( -75.31 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_3HJN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HJN-query.scw
PDB file :
Tito_Scwrl_3HJN.pdb
: