Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MITKTSKNAARLKRHARVRAKLSGTAERPRLNVFRSNKHIYAQIID--DVNGVTLASASTLDKDL-N-VESTGDTSAATKVGELVAKRAAEKGISDVVFDRGGYL--YHGRVKALADAAREAGLKF
1VQ8 Chain:N ((24-130))
------------------RLRL-LKSGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLDIGLNSPTPGSKVFAIQEGAIDAGLDI
General information:
TITO was launched using:
RESULT:
Template:
1VQ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22217 for 769 contacts (-28.9/contact) +
2D Compatibility (PS) -11041 + (NN) -3597 + (LL) 1716
1D Compatibility (HY) 0 + (ID) 1750
Total energy: -36889.0 ( -47.97 by residue)
QMean score : 0.588
(partial model without unconserved sides chains):
PDB file :
Tito_1VQ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VQ8-query.scw
PDB file :
Tito_Scwrl_1VQ8.pdb
: