Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWGVPGLSWLPGEDPDPFGH
3E3U Chain:A ((2-197))
-AVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWGVPGLSWLPGEDPDPFGH
General information:
TITO was launched using:
RESULT:
Template:
3E3U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102522 for 1594 contacts (-64.3/contact) +
2D Compatibility (PS) -21665 + (NN) -13648 + (LL) 208
1D Compatibility (HY) -24800 + (ID) 9800
Total energy: -172227.0 ( -108.05 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_3E3U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3E3U-query.scw
PDB file :
Tito_Scwrl_3E3U.pdb
: