Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVGEGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGTAPGSP
3TR0 Chain:A ((5-188))
------------------NKANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIY-E-RHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREEMAHYKEFDYLVVNDNFDQAVQNLIHIISAER----
General information:
TITO was launched using:
RESULT:
Template:
3TR0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89901 for 1396 contacts (-64.4/contact) +
2D Compatibility (PS) -20943 + (NN) -13814 + (LL) -336
1D Compatibility (HY) -16800 + (ID) 3450
Total energy: -145244.0 ( -104.04 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_3TR0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TR0-query.scw
PDB file :
Tito_Scwrl_3TR0.pdb
: