Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLRLVSPIKAFADGIVAVAIAVVLMFGLANTPRAVAADERLQF-TATTL--SGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-----AVTFVGIATRA-DVGAMQSFVSKYNLNFTNLNDADGVIWARYN---VPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAALTS
3LWA Chain:A ((31-180))
-----------------------------------EADRQQLPDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHRPAAVF--LREVTSKDVLDVALPLV-
General information:
TITO was launched using:
RESULT:
Template:
3LWA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89873 for 1050 contacts (-85.6/contact) +
2D Compatibility (PS) -13916 + (NN) -165 + (LL) 3196
1D Compatibility (HY) -6000 + (ID) 1200
Total energy: -107958.0 ( -102.82 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_3LWA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LWA-query.scw
PDB file :
Tito_Scwrl_3LWA.pdb
: