Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA
1N5N Chain:A ((13-179))
MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ-
General information:
TITO was launched using:
RESULT:
Template:
1N5N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73130 for 1316 contacts (-55.6/contact) +
2D Compatibility (PS) -17538 + (NN) -2530 + (LL) 144
1D Compatibility (HY) -24000 + (ID) 8300
Total energy: -125354.0 ( -95.25 by residue)
QMean score : 0.713
(partial model without unconserved sides chains):
PDB file :
Tito_1N5N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N5N-query.scw
PDB file :
Tito_Scwrl_1N5N.pdb
: