Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence--MNVLIVYAHPEPRSLNGALKDFAVARLEAAGHAVQVSDLYAMGWKAVLDAGD-SLEREASERFDPSATSLRAFENGWQSVDIAGEQDKLRWADTLILQFPLWWFSMPAILKGWIDRVYACGFAYGVGEHSDSHWGDRYGEGRMQGKRAMLVVTAGGWESHYAARGINGPMDDLLFPIHHGILHYPGFEVLPPFVVYRSGRIDAERFAALSEQLGRRLDDLQRAAPIPFRRQNGGDYLIPA-----LTLRDELAPQRAGFAM--HLAE------------
1D4A Chain:A ((1-273))VGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYT--------YAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFCGFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMKKEVQDEEKNKKFGLSVGHHLGKSIPTDNQIKARK


General information:
TITO was launched using:
RESULT:

Template: 1D4A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145789 for 1851 contacts (-78.8/contact) +
2D Compatibility (PS) -27058 + (NN) -13990 + (LL) 80
1D Compatibility (HY) -19200 + (ID) 4800
Total energy: -210757.0 ( -113.86 by residue)
QMean score : 0.384

(partial model without unconserved sides chains):
PDB file : Tito_1D4A.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1D4A-query.scw
PDB file : Tito_Scwrl_1D4A.pdb: