Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | --MNVLIVYAHPEPRSLNGALKDFAVARLEAAGHAVQVSDLYAMGWKAVLDAGD-SLEREASERFDPSATSLRAFENGWQSVDIAGEQDKLRWADTLILQFPLWWFSMPAILKGWIDRVYACGFAYGVGEHSDSHWGDRYGEGRMQGKRAMLVVTAGGWESHYAARGINGPMDDLLFPIHHGILHYPGFEVLPPFVVYRSGRIDAERFAALSEQLGRRLDDLQRAAPIPFRRQNGGDYLIPA-----LTLRDELAPQRAGFAM--HLAE------------ |
1D4A Chain:A ((1-273)) | VGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYT--------YAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFCGFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMKKEVQDEEKNKKFGLSVGHHLGKSIPTDNQIKARK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1D4A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -145789 for 1851 contacts (-78.8/contact) +
2D Compatibility (PS) -27058 + (NN) -13990 + (LL) 80
1D Compatibility (HY) -19200 + (ID) 4800
Total energy: -210757.0 ( -113.86 by residue)
QMean score : 0.384
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