Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGF-LTGKRALIVGVASKLSIASGIAAAMHREGAELAFTYQNDKLRGRVEEFASGWGSRPELCFPCDVADDSQIEAVFAALGKHWDGLDIIVHSVGFAPGDQLDGDFTAVTTREGFRIAHDISAYSFIALAKAGREMMKGRNGSLLTLSYLGAERTMPNYNVMGMAKASLEAGVRYLAGSLGAEGTRVNAVSAGPIRTLAASGIKSFRKMLAANERQTPLRRNVTIEEVGNAGAFLCSDLASGISGEILYVDGGFNTTAMGPLDDD
3OIF Chain:A ((1-257))
MNFSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLN-TNRDGFLLAHNISSYSLTAVVKAARPMMT-EGGSIVTLTYLGGELVMPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERAPLRRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSGFHITAR------
General information:
TITO was launched using:
RESULT:
Template:
3OIF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -181228 for 2212 contacts (-81.9/contact) +
2D Compatibility (PS) -28020 + (NN) -12009 + (LL) -60
1D Compatibility (HY) -26400 + (ID) 6350
Total energy: -254067.0 ( -114.86 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_3OIF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OIF-query.scw
PDB file :
Tito_Scwrl_3OIF.pdb
: