Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHRSPLAWLRLLLAAVLGAFLLGGPLHAAETAATRSPAWAQAVDPSINLYRMSPTLYRSALPNAQSVALLQRLQVKTVVS-------FIKDDDRAWLGQAPVRVLSLPTHADRVDD--AEVLSVLRQLQAAERE--GPVLMHCKHGNNRTGLFAAMYRIVVQGWDKQAALEEMQHGGFGDEDDMRDASAYVRGADVDGLRLAMANGECSPSRFAVCHVREWMAQALD----RP
1VHR Chain:A ((7-184))
--------------------------SVQDLNDLLSDGSGCYSLPSQPCNEVTPRIYVGNASVAQDIPKLQKLGITHVLNAAEGRSFMHVNTNANFYKDSGITYLGIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGYSRSPTLVIAYLMMRQKMDVKSALSIVRQN----------------------------R-EIGPNDGFLAQLCQLNDRLAKEGKLKP
General information:
TITO was launched using:
RESULT:
Template:
1VHR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61476 for 1282 contacts (-48.0/contact) +
2D Compatibility (PS) -18391 + (NN) -16177 + (LL) 3424
1D Compatibility (HY) -6400 + (ID) 1450
Total energy: -100470.0 ( -78.37 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_1VHR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VHR-query.scw
PDB file :
Tito_Scwrl_1VHR.pdb
: