Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRPLVAGNWKMHGTHSSVAELIKGLRQLALP-SGVDVAVMPPCLFISQVIQGL-AGKAIDVGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAENAEVAKGVRLLYGGSVKAASAAELFGMPDIDGGLVGGASLNADEFGAICRAAGS----
1TRE Chain:A ((3-257))
MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAE-GSHIMLGAQNVNLNL-SGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA
General information:
TITO was launched using:
RESULT:
Template:
1TRE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151454 for 2133 contacts (-71.0/contact) +
2D Compatibility (PS) -27818 + (NN) -14765 + (LL) 352
1D Compatibility (HY) -18000 + (ID) 6500
Total energy: -218185.0 ( -102.29 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_1TRE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TRE-query.scw
PDB file :
Tito_Scwrl_1TRE.pdb
: