Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MVNLILVGPMGAGKSTIGRLLAKELHLAFKDSDKEIEQRCGANIPWIFDVEGEVGFREREQAMLTELCAADGMVIATGGGAVMRDGNRQVLRAGGRVVYLHASVEHQIARTARDRNRPLLQKPNPGQILRDLMALRDPLYREIADVVVETDERPPRLVVQEILERLRKLPPR
1KAG Chain:A ((3-171))
EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTPLLHV-----ETPPREVLEALANERNPLYEEIADVTI-----SAKVVANQIIHML-E----
General information:
TITO was launched using:
RESULT:
Template:
1KAG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79983 for 1253 contacts (-63.8/contact) +
2D Compatibility (PS) -16820 + (NN) -1888 + (LL) 812
1D Compatibility (HY) -12800 + (ID) 3850
Total energy: -114529.0 ( -91.40 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_1KAG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KAG-query.scw
PDB file :
Tito_Scwrl_1KAG.pdb
: