Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLQATCARIARRFVWRNRMPRRLFIGLFLLPLPLFAAPPKDELAYAVGARLGMRLQQEMPGLELSELLLGLRQAYRGEALEIPPERIEQLLLQHENATTETPRTTPAE---------ARFLANEKARFGVRELTGGVLVSELRRGQGNGIGAATQVHVRYRGLLADGQVFDQSESA---EWFALDSVIEGWRTALRAMPVGARWRVVIPSAQAYGHEGAGDLIPPDAPLVFEIDLLGFR--
1FD9 Chain:A ((9-212))
-------------------------------------TDKDKLSYSIGADLGKNFKNQGIDVNPEAMAKGMQDAMSGAQLALTEQQMKDVLNKFQKDLMAKRTAEFNKKADENKVKGEAFLTENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISVKKS
General information:
TITO was launched using:
RESULT:
Template:
1FD9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80114 for 1230 contacts (-65.1/contact) +
2D Compatibility (PS) -20735 + (NN) -9842 + (LL) 3908
1D Compatibility (HY) -13600 + (ID) 2850
Total energy: -123233.0 ( -100.19 by residue)
QMean score : 0.447
(partial model without unconserved sides chains):
PDB file :
Tito_1FD9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FD9-query.scw
PDB file :
Tito_Scwrl_1FD9.pdb
: