Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHSLQAKILDPRLGSDFPLPQYATPGSAGLDLRAMLKEDSVLGPGQTLLIPTGLSIYIADPGLAALVLPRSGLGHKHGIVLGNLVGLIDSDYQGELMVSCWNRG-ESPFTIAVGERIAQLVLVPVVQAHFELVEAFDESQRGAGGFGHSGSH
1SMC Chain:B ((29-156))
-----------RLDPGLPLPSRAHDGDAGVDLYS--AEDVELAPGRRALVRTGVAVAVPF-GMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEA-------------
General information:
TITO was launched using:
RESULT:
Template:
1SMC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82334 for 820 contacts (-100.4/contact) +
2D Compatibility (PS) -13137 + (NN) -4401 + (LL) 804
1D Compatibility (HY) -7600 + (ID) 2450
Total energy: -109118.0 ( -133.07 by residue)
QMean score : 0.360
(partial model without unconserved sides chains):
PDB file :
Tito_1SMC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SMC-query.scw
PDB file :
Tito_Scwrl_1SMC.pdb
: