Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNKPITPSTYVRCLNVGLIRKLSDFIDPQEGWKKLAVAIKKPSGDDRYNQFHIRRFEALLQTGKSPTSELLFDWGTTNCTVGDLVDLLIQNEFFAPASLLLPDAVPKTANTLPSKEAITVQQKQMPFCDKDRTLMTPVQNLEQSYMPPDSSSPENKSLEVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGF-SSDGDDLCLVYVYMPNGSLLDRLSCL-DGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVG--TTAYMAPEALR-GEITPKSDIYSFGVVLLEIIT--GLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTAS-- |
| 1BYG Chain:A ((15-276)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------GWAL---------------------NMKELKLLQTIGKGEFGDVMLGDYRG--NKVAVKCIK--------NDAQAFLAEASVMTQLRHSNLVQLLGVIV--EEGLYIVTEYMAKGSLVDYLRSRG--RSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFG-------------------LLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL-KDVVPRVEK-------------GYKMDAPDGCP-PAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTHEL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1BYG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -118451 for 1837 contacts (-64.5/contact) +
2D Compatibility (PS) -25441 + (NN) -11474 + (LL) 13368
1D Compatibility (HY) -20800 + (ID) 3700
Total energy: -166498.0 ( -90.64 by residue)
QMean score : 0.400
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