Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSYDVIISGGGLLGLITAVGLSNNSVSVAVIEKNNLPRIIDDNRAFAISQGSRKILEKLGIWQFIESEAEPILDICILD-ENSPITVHYNHKMV--SEEPMGYVINSTVIWNAINNNFLNKLNIYSLHSYRTITCDAGYVEVTLGNNQKLISSLLICAEGKNSKLPGLF-SMSIIKFDYKQSSIVFNVKHEL-HHQNLAVEQFFP-GGPFAILPMKSGYTSSIVWTEKSEISKMLMNLSEEEFIIELKKRFGSYLGEV-KLD---G--ERKSYPLSFA-SAKKLYKSRVLLIGDAAHSIHPVAGQGLNLGIRDAESVVRQITAAKAFGIDVGSSYLLKKISRDRCLDNFTMALATDGLNRIFSNRIFCAKTLRNFGLMAVENSKFLKKRFIRHAMGFV |
| 3RP8 Chain:A ((23-370)) | -HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKE--I----AAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRD-SVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLVEIDEALAPGDQWTTFVGEGKQVSLMPVSA-GRFYFFFDVPLPAGL---AEDRDTLRADLSRYFAGWAPPVQKLIAALDPQTTNRIEIHDIEPFSRLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQTR----DI--AAALREYEAQRCDRVRDLVLKARKRCDITHGKDMQLTEAWYQELREETGERIINGMCDTILSGPL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RP8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -190669 for 2839 contacts (-67.2/contact) +
2D Compatibility (PS) -35702 + (NN) -9624 + (LL) 844
1D Compatibility (HY) -11200 + (ID) 2950
Total energy: -249301.0 ( -87.81 by residue)
QMean score : 0.376
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