Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSITLHSQKDFEFMRKAGRLAAETLDFIAPYVKVGVTTNKLNDLCHDFIVKAGAIPA-PLNYKGYPKSICTSKNAVVCHGIPDD-KPLKDGDILNIDVTVILNGWYGDTSRMFWAGKPSIKAKRLCDATYVALMEAIKQVKPGNKLNEIGLAVEKYIRDFGYSIVRSYCGHGIGKVFHAPPNVVHFYDQGESLVLKEGMFFTIEPMINAGKHETLLSRLDNWTVTTRDLSLSAQFEHTLGVTEDGVEIFTLSPKNWHFPPYN
2GG2 Chain:A ((1-259))
-AISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRT-MKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILTLRKDDTIPAIIS
General information:
TITO was launched using:
RESULT:
Template:
2GG2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150639 for 2239 contacts (-67.3/contact) +
2D Compatibility (PS) -28172 + (NN) -14426 + (LL) 180
1D Compatibility (HY) -24000 + (ID) 6950
Total energy: -224007.0 ( -100.05 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_2GG2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GG2-query.scw
PDB file :
Tito_Scwrl_2GG2.pdb
: