Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNAKRKVVIYIKQYCPFCKRAKELLDEKGVKYEEIDVFKNSDLFSNIKLKYNVRTVPQIFIADKNGNYVHHIAGCDKLMDLEREGKLDDMLSTNYDKTDVTTYTSNSDEYEEYVASHDDFM
1FOV Chain:A ((2-80))
------NVEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQ------HIGGYDDLYALDARGGLDPLLK-----------------------------
General information:
TITO was launched using:
RESULT:
Template:
1FOV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69226 for 564 contacts (-122.7/contact) +
2D Compatibility (PS) -8471 + (NN) -2550 + (LL) 1596
1D Compatibility (HY) -6000 + (ID) 1650
Total energy: -86301.0 ( -153.02 by residue)
QMean score : 0.681
(partial model without unconserved sides chains):
PDB file :
Tito_1FOV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FOV-query.scw
PDB file :
Tito_Scwrl_1FOV.pdb
: